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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
40
ATAC-seq
23
DNase-seq
21
snATAC-seq
Assay category
84
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
23
June, 2019
19
September, 2020
1
March, 2019
Available data
394
bam
350
fastq
198
tsv
179
bed narrowPeak
160
tagAlign
157
txt
153
zippedFastqFolder
113
bigWig
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
177
Homo sapiens
Biosample type
160
primary cell
17
tissue
Organ
86
epithelium
83
pancreas
10
brain
7
kidney
3
heart
1
blood vessel
1
connective tissue
1
vasculature
Project
153
HPAP
24
AMP
Genome assembly (visualization)
hg19
282
GRCh38
Lab
153
Klaus Kaestner, Upenn
23
AMP-T2D consortium
1
Mark McCarthy, Oxford
assembly!
hg19
BIOSAMPLE
ASSAY
177 results
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single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
glomerular visceral epithelial cell
2
+ See 4 more…
tissue
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 10 more…
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