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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
221
ATAC-seq
178
single cell RNA-seq
156
total RNA-seq
87
RNA microarray
53
pCHi-C
35
snATAC-seq
28
WGBS
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
156
Transcription
Date released
59
August, 2021
26
May, 2022
25
February, 2020
17
February, 2023
14
October, 2019
7
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
Available data
59
txt
39
tsv
6
bam
6
fastq
Organism
156
Homo sapiens
Biosample type
135
tissue
9
cell line
9
in vitro differentiated cells
3
primary cell
Organ
49
kidney
30
liver
20
pancreas
19
eye
12
brain
6
connective tissue
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
epithelium
2
musculature of body
1
nerve
1
spinal cord
Project
149
AMP
7
T1D
Genome assembly (visualization)
hg19
1283
GRCh38
Lab
Klaus Kaestner, Upenn
60
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
156 results
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total RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
pigmented layer of retina
2
+ See 29 more…
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
primary cell
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
See all biosamples
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