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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ChIP-seq
267
ATAC-seq
254
single cell RNA-seq
236
total RNA-seq
87
RNA microarray
75
WGBS
73
snATAC-seq
51
pCHi-C
16
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
267
DNA accessibility
Date released
64
August, 2021
58
February, 2023
55
May, 2020
39
May, 2022
16
May, 2021
12
October, 2019
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
Available data
99
bed narrowPeak
64
xls
39
zippedFastqFolder
12
tsv
11
fastq
10
bigWig
1
bam
1
bed broadPeak
Organism
267
Homo sapiens
Biosample type
135
tissue
116
primary cell
16
cell line
Organ
81
pancreas
75
kidney
65
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
brain
1
eye
1
pituitary gland
1
skin of body
Project
207
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
hg19
232
GRCh38
Lab
130
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
assembly!
hg19
month_released!
April, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
267 results
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ATAC-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
25
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
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cell line
EndoC_BH1
16
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