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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
270
ATAC-seq
260
single cell RNA-seq
248
total RNA-seq
85
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
7
3D chromatin structure
Date released
5
January, 2018
4
July, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Available data
6
fastq
5
bigWig
1
bedpe bed3+
1
hic
Organism
12
Homo sapiens
Biosample type
5
tissue
4
in vitro differentiated cells
1
cell line
1
primary cell
1
stem cell
Organ
4
limb
4
musculature of body
1
embryo
1
liver
1
pancreas
Project
11
AMP
1
ITG
Genome assembly (visualization)
hg19
5
hg18
2
GRCh38
Lab
10
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
assembly!
hg19
month_released!
December, 2019
BIOSAMPLE
ASSAY
12 results
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Hi-C
GRO-seq
tissue
gastrocnemius medialis
4
islet of Langerhans
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
cell line
HepG2
1
primary cell
chondrocytes
1
stem cell
hESC
1
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