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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
20
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
20
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
7
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
23
bam
10
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
63
tissue
3
primary cell
2
cell line
Organ
279
pancreas
222
kidney
209
epithelium
170
heart
146
liver
89
bone element
68
blood vessel
68
vasculature
52
brain
52
connective tissue
48
artery
35
adipose tissue
25
eye
25
limb
20
lung
17
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
122
GRCh38
hg19
Lab
68
AMP-T2D consortium
assembly!
hg19
month_released!
December, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
2
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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