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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
55
ChIP-seq
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
92
DNA accessibility
73
Transcription
55
DNA binding
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
56
February, 2023
45
May, 2022
29
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
4
August, 2021
4
July, 2018
4
September, 2017
3
March, 2020
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
98
fastq
48
bam
39
zippedFastqFolder
10
bigWig
6
txt
5
tagAlign
3
tsv
1
bed broadPeak
1
bedpe bed3+
Organism
233
Homo sapiens
Biosample type
114
primary cell
86
tissue
34
cell line
1
in vitro differentiated cells
Organ
235
pancreas
217
kidney
192
heart
161
liver
158
epithelium
112
brain
89
bone element
85
connective tissue
68
blood vessel
68
vasculature
59
adipose tissue
48
artery
26
eye
25
limb
20
lung
20
musculature of body
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
102
HPAP
28
T1D
Genome assembly (visualization)
hg19
627
GRCh38
Lab
102
Klaus Kaestner, Upenn
86
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
month_released!
June, 2019
assay_title!
WGBS
BIOSAMPLE
ASSAY
235 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
pancreatic beta cell
16
11
6
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
19
7
4
1
body of pancreas
1
9
pancreas
1
3
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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