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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
20
ChIP-seq
8
WGBS
3
DNase-seq
3
total RNA-seq
Assay category
96
Transcription
38
DNA accessibility
20
DNA binding
8
DNA methylation
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
3
February, 2020
March, 2020
2
February, 2021
Available data
95
tsv
38
bed narrowPeak
29
bam
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
162
Homo sapiens
Biosample type
157
tissue
3
primary cell
2
cell line
Organ
285
pancreas
223
kidney
213
epithelium
165
liver
162
heart
120
brain
93
connective tissue
89
bone element
70
blood vessel
70
vasculature
64
adipose tissue
48
artery
27
eye
26
limb
22
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
162
AMP
Genome assembly (visualization)
224
GRCh38
hg19
Lab
162
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
month_released!
March, 2020
BIOSAMPLE
ASSAY
162 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
total RNA-seq
tissue
coronary artery
35
2
1
heart left ventricle
18
6
4
heart right ventricle
17
2
2
right cardiac atrium
18
1
1
left cardiac atrium
18
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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