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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
pCHi-C
Assay category
12
DNA binding
4
3D chromatin structure
3
DNA methylation
2
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
May, 2019
May, 2022
Available data
4
bam
2
tagAlign
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
21
Homo sapiens
Biosample type
19
tissue
2
primary cell
Organ
223
kidney
202
heart
201
pancreas
144
liver
133
epithelium
120
brain
91
connective tissue
88
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
26
limb
23
eye
21
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
21
AMP
Genome assembly (visualization)
hg19
53
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
month_released!
May, 2022
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
tissue
skeletal muscle tissue
9
2
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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