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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
231
ATAC-seq
222
total RNA-seq
220
single cell RNA-seq
87
RNA microarray
53
pCHi-C
52
snATAC-seq
34
WGBS
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
52
DNA accessibility
Date released
27
February, 2021
May, 2022
16
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
Organism
52
Homo sapiens
Biosample type
35
primary cell
17
tissue
Organ
11
pancreas
8
blood
8
bodily fluid
6
kidney
Project
27
HPAP
18
T1D
7
AMP
Lab
27
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
28
audit script error
assembly!
hg19
month_released!
May, 2022
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
52 results
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snATAC-seq
primary cell
Langerhans cell
27
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
kidney
6
pancreas
4
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