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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
12
DNA binding
4
3D chromatin structure
3
DNA methylation
2
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
May, 2022
Available data
4
bam
3
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
22
Homo sapiens
Biosample type
20
tissue
2
primary cell
Organ
225
kidney
205
heart
202
pancreas
146
liver
133
epithelium
112
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
hg19
53
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
month_released!
May, 2022
October, 2017
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
9
2
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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