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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
83
snATAC-seq
26
DNase-seq
Assay category
562
DNA binding
515
Transcription
109
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
27
February, 2021
23
June, 2019
21
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
2
October, 2019
1
August, 2017
1
August, 2022
Available data
27
fastq
23
bam
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
23
bigWig
21
zippedFastqFolder
Organism
108
Homo sapiens
Biosample type
65
primary cell
44
tissue
Organ
15
kidney
13
pancreas
10
brain
10
lung
8
blood
8
bodily fluid
8
epithelium
3
heart
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
48
HPAP
33
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
207
GRCh38
hg19
Lab
48
Klaus Kaestner, Upenn
27
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
assembly!
hg19
month_released!
September, 2017
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
109 results
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snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 2 more…
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
body of pancreas
2
+ See 14 more…
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