Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
total RNA-seq
14
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
70
DNA accessibility
14
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
2
broad histone mark
2
histone
2
histone modification
Date released
200
August, 2021
141
February, 2021
135
August, 2017
135
May, 2022
125
November, 2017
83
October, 2019
79
May, 2020
76
May, 2021
67
February, 2023
47
September, 2023
43
September, 2020
40
May, 2024
31
June, 2019
30
March, 2020
29
October, 2018
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
98
tsv
65
bed narrowPeak
64
xls
9
bam
9
tagAlign
8
txt
1
bedpe bed3+
1
bigWig
1
vcf
Organism
199
Homo sapiens
Biosample type
178
tissue
12
cell line
9
in vitro differentiated cells
1
primary cell
Organ
92
heart
80
kidney
8
liver
6
blood vessel
6
vasculature
3
epithelium
3
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
200
AMP
Genome assembly (visualization)
90
GRCh38
hg19
Lab
111
AMP-T2D consortium
78
Katalin Susztak, Upenn
11
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
month_released!
May, 2023
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
200 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
See all biosamples
Download