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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
50
total RNA-seq
18
ChIP-seq
6
snATAC-seq
1
Hi-C
1
RNA microarray
Assay category
156
Transcription
70
DNA accessibility
18
DNA binding
1
3D chromatin structure
Target of assay
16
control
2
broad histone mark
2
histone
2
histone modification
Date released
238
August, 2021
161
May, 2022
154
February, 2023
138
February, 2021
135
August, 2017
87
October, 2019
80
May, 2020
76
November, 2017
67
May, 2021
59
September, 2020
47
September, 2023
40
May, 2024
31
June, 2019
29
October, 2018
28
March, 2020
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2018
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2019
5
January, 2018
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2023
2
March, 2019
1
August, 2018
1
August, 2022
1
January, 2019
1
September, 2018
Available data
99
tsv
65
bed narrowPeak
64
xls
57
txt
17
bam
9
tagAlign
8
fastq
1
bedpe bed3+
1
bigWig
Organism
245
Homo sapiens
Biosample type
228
tissue
cell line
17
in vitro differentiated cells
1
primary cell
Organ
127
kidney
92
heart
6
blood vessel
6
vasculature
3
embryo
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
Project
246
AMP
Genome assembly (visualization)
128
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
117
AMP-T2D consortium
2
Bing Ren, UCSD
assembly!
hg19
biosample_type!
cell line
BIOSAMPLE
ASSAY
246 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
9
pancreatic endoderm
3
definitive endodermal cell
1
embryonic stem cell
1
endocrine cell
1
+ See 2 more…
primary cell
hepatocyte
1
See all biosamples
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