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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
58
ChIP-seq
35
ATAC-seq
3
pCHi-C
3
total RNA-seq
2
DNase-seq
Assay category
96
Transcription
58
DNA binding
37
DNA accessibility
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
18
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
6
May, 2019
3
February, 2020
3
March, 2020
2
February, 2021
2
June, 2019
Available data
98
tsv
77
bed narrowPeak
42
bigWig
20
bam
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
2
tagAlign
Organism
194
Homo sapiens
Biosample type
192
tissue
2
cell line
Organ
237
pancreas
225
kidney
197
heart
166
epithelium
161
liver
122
brain
89
bone element
connective tissue
69
blood vessel
69
vasculature
59
adipose tissue
48
artery
27
eye
25
limb
20
lung
20
musculature of body
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
Genome assembly (visualization)
251
GRCh38
hg19
Lab
154
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assembly!
hg19
organ_slims!
connective tissue
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
194 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNase-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
1
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
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cell line
smooth muscle cell of the coronary artery
2
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