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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
58
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
90
Transcription
60
DNA accessibility
Date released
258
August, 2021
161
May, 2022
156
February, 2023
141
February, 2021
125
November, 2017
96
October, 2019
82
May, 2021
81
May, 2020
74
August, 2017
59
September, 2020
47
September, 2023
30
March, 2020
27
June, 2019
23
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
11
October, 2018
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2022
1
October, 2022
1
September, 2018
Available data
76
fastq
35
bed narrowPeak
16
tsv
4
txt
Organism
155
Homo sapiens
Biosample type
88
primary cell
62
tissue
6
cell line
Organ
56
pancreas
40
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
4
bone element
connective tissue
4
eye
4
skeleton
Project
76
HPAP
57
AMP
23
T1D
Genome assembly (visualization)
35
GRCh38
hg19
Lab
76
Klaus Kaestner, Upenn
57
AMP-T2D consortium
23
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
assembly!
hg19
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
156 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
tissue
coronary artery
35
islet of Langerhans
5
11
2
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
+ See 4 more…
cell line
EndoC_BH1
3
2
1
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