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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
47
ATAC-seq
17
WGBS
16
DNase-seq
1
Hi-C
Assay category
63
DNA accessibility
57
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
53
histone
53
histone modification
37
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
54
November, 2017
35
February, 2023
16
June, 2019
9
July, 2019
9
November, 2018
7
August, 2020
3
September, 2020
2
August, 2017
1
August, 2021
1
March, 2023
1
October, 2017
Available data
108
bed narrowPeak
101
bigWig
92
bam
72
bigBed narrowPeak
41
tagAlign
24
fastq
17
bed bedMethyl
17
bigBed bedMethyl
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
hic
Organism
138
Homo sapiens
Biosample type
120
tissue
12
primary cell
5
cell line
1
in vitro differentiated cells
Organ
kidney
64
brain
44
heart
37
blood vessel
37
vasculature
35
artery
16
epithelium
16
pancreas
5
liver
3
connective tissue
2
adipose tissue
2
spleen
1
limb
1
musculature of body
Project
127
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2882
GRCh38
5
hg18
Lab
127
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
ITG
assembly!
hg19
organ_slims!
kidney
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
tissue
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
middle frontal area 46
9
+ See 23 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
cardiac fibroblast
1
chondrocytes
1
cell line
HepG2
4
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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