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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
273
ChIP-seq
173
single cell RNA-seq
138
ATAC-seq
114
total RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
23
WGBS
16
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
287
Transcription
273
DNA binding
181
DNA accessibility
25
DNA methylation
5
3D chromatin structure
Target of assay
139
control
135
histone
135
histone modification
73
broad histone mark
62
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
228
August, 2021
92
February, 2021
79
October, 2019
76
November, 2017
70
August, 2017
62
February, 2023
47
September, 2023
29
October, 2018
24
February, 2020
22
May, 2019
21
March, 2020
19
April, 2020
16
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
10
October, 2017
9
November, 2018
8
January, 2021
7
May, 2022
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
217
bam
167
bed narrowPeak
156
tsv
156
txt
90
tagAlign
85
bigWig
68
bigBed narrowPeak
64
xls
63
fastq
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
5
csv
1
bedpe bed3+
Organism
886
Homo sapiens
Biosample type
889
tissue
459
primary cell
96
in vitro differentiated cells
61
cell line
7
stem cell
Organ
207
kidney
160
heart
122
brain
liver
92
pancreas
88
bone element
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
794
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1581
GRCh38
hg19
Lab
640
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
liver
BIOSAMPLE
ASSAY
889 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
bone element
84
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
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