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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
511
ChIP-seq
263
single cell RNA-seq
189
ATAC-seq
175
total RNA-seq
87
RNA microarray
72
snATAC-seq
51
pCHi-C
24
DNase-seq
24
WGBS
6
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
24
DNA accessibility
Date released
21
June, 2019
2
October, 2019
1
August, 2017
Available data
21
bam
21
bed bed3+
21
bed broadPeak
21
bed narrowPeak
21
bigBed broadPeak
21
bigBed narrowPeak
21
bigWig
Organism
24
Homo sapiens
Biosample type
15
tissue
9
primary cell
Organ
10
brain
9
kidney
8
epithelium
3
heart
pancreas
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
24
AMP
Genome assembly (visualization)
199
GRCh38
hg19
Lab
24
AMP-T2D consortium
assembly!
hg19
organ_slims!
mammary gland
pancreas
BIOSAMPLE
ASSAY
24 results
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DNase-seq
tissue
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
globus pallidus
1
+ See 9 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
See all biosamples
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