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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
257
single cell RNA-seq
245
total RNA-seq
235
ATAC-seq
87
RNA microarray
83
snATAC-seq
73
WGBS
51
pCHi-C
25
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
DNA accessibility
Date released
22
June, 2019
2
October, 2019
1
August, 2017
Available data
22
bam
22
bed bed3+
22
bed broadPeak
22
bed narrowPeak
22
bigBed broadPeak
22
bigBed narrowPeak
22
bigWig
Organism
25
Homo sapiens
Biosample type
17
tissue
8
primary cell
Organ
10
brain
9
kidney
8
epithelium
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
liver
vasculature
Project
25
AMP
Genome assembly (visualization)
196
GRCh38
hg19
Lab
25
AMP-T2D consortium
assembly!
hg19
organ_slims!
mammary gland
vasculature
BIOSAMPLE
ASSAY
25 results
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DNase-seq
tissue
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 10 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
cardiac fibroblast
1
See all biosamples
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