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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
17
pCHi-C
8
snATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
37
DNA binding
8
DNA accessibility
5
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
59
May, 2021
8
January, 2021
5
February, 2023
Organism
72
Homo sapiens
Biosample type
42
in vitro differentiated cells
24
primary cell
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
42
AMP
30
T1D
Genome assembly (visualization)
hg19
180
GRCh38
Lab
895
AMP-T2D consortium
172
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
72
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Bing Ren, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
assembly!
hg19
organ_slims!
pancreas
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples