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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
ChIP-seq
263
single cell RNA-seq
189
ATAC-seq
170
total RNA-seq
87
RNA microarray
64
snATAC-seq
35
pCHi-C
24
DNase-seq
24
WGBS
6
Hi-C
5
GRO-seq
5
STARR-seq
3
snDrop-seq
2
RRBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
170
Transcription
Date released
58
August, 2021
51
February, 2023
24
February, 2020
20
May, 2022
14
October, 2019
2
May, 2020
1
May, 2021
Available data
53
txt
39
fastq
37
tsv
Organism
170
Homo sapiens
Biosample type
115
tissue
42
primary cell
9
cell line
4
in vitro differentiated cells
Organ
pancreas
55
epithelium
49
kidney
30
liver
19
eye
12
brain
6
connective tissue
4
bone element
4
skeleton
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
musculature of body
1
nerve
1
spinal cord
Project
131
AMP
39
HPAP
Genome assembly (visualization)
857
GRCh38
hg19
Lab
53
AMP-T2D consortium
49
Katalin Susztak, Upenn
39
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
9
Bing Ren, UCSD
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
organ_slims!
pancreas
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
170 results
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Clear Filters
total RNA-seq
tissue
kidney
49
liver
20
islet of Langerhans
14
retina
3
pigmented layer of retina
2
+ See 27 more…
primary cell
exocrine cell
39
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
cell line
HepG2
9
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
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