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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
21
DNase-seq
Assay category
56
DNA binding
21
DNA accessibility
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
54
November, 2017
21
June, 2019
2
November, 2018
Available data
340
bam
242
fastq
217
bed narrowPeak
187
tsv
155
tagAlign
151
txt
137
bigWig
77
bigBed narrowPeak
73
zippedFastqFolder
64
xls
21
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
13
bed bedMethyl
13
bigBed bedMethyl
8
csv
1
bedpe bed3+
1
hic
1
vcf
Organism
77
Homo sapiens
Biosample type
66
tissue
7
primary cell
4
cell line
Organ
62
brain
7
kidney
6
epithelium
4
liver
3
heart
pancreas
1
blood vessel
1
connective tissue
1
vasculature
Project
77
AMP
Genome assembly (visualization)
909
GRCh38
hg19
Lab
77
AMP-T2D consortium
assembly!
hg19
organ_slims!
pancreas
intestine
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
DNase-seq
tissue
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
middle frontal area 46
9
cingulate gyrus
5
+ See 13 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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