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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
12
total RNA-seq
10
DNase-seq
3
ATAC-seq
pCHi-C
Assay category
95
DNA binding
13
DNA accessibility
12
Transcription
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
76
November, 2017
12
February, 2020
10
June, 2019
10
October, 2017
8
October, 2019
3
May, 2019
1
July, 2019
Available data
88
bam
75
tagAlign
63
bigWig
62
bed narrowPeak
62
bigBed narrowPeak
12
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
fastq
Organism
120
Homo sapiens
Biosample type
120
tissue
Organ
287
pancreas
223
kidney
213
epithelium
164
liver
162
heart
120
brain
91
connective tissue
88
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
26
limb
23
eye
22
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
120
AMP
Genome assembly (visualization)
217
GRCh38
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
tissue
layer of hippocampus
22
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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