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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
4
total RNA-seq
2
pCHi-C
1
DNase-seq
Assay category
23
DNA binding
4
Transcription
1
DNA accessibility
Target of assay
13
histone
13
histone modification
10
control
8
broad histone mark
5
narrow histone mark
Date released
19
August, 2017
4
February, 2023
4
June, 2019
1
March, 2020
1
May, 2021
1
October, 2019
Available data
14
tagAlign
9
bam
5
fastq
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
1
tsv
Organism
30
Homo sapiens
Biosample type
23
in vitro differentiated cells
5
primary cell
1
stem cell
1
tissue
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
29
AMP
1
T1D
Genome assembly (visualization)
hg19
142
GRCh38
Lab
29
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assembly!
hg19
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
total RNA-seq
pCHi-C
DNase-seq
in vitro differentiated cells
adipocyte
19
1
immature adipocyte
2
preadipocyte
1
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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