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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
67
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
1
GRO-seq
Assay category
67
DNA binding
Target of assay
36
histone
36
histone modification
26
control
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
10
April, 2019
6
May, 2019
4
December, 2017
3
February, 2018
2
February, 2021
2
June, 2019
Available data
40
bed narrowPeak
40
bigWig
27
bam
7
fastq
2
tagAlign
Organism
67
Homo sapiens
Biosample type
56
tissue
7
in vitro differentiated cells
2
cell line
2
primary cell
Organ
123
liver
95
brain
77
connective tissue
60
heart
55
pancreas
54
adipose tissue
28
epithelium
23
blood vessel
23
vasculature
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
5
vein
4
gonad
4
ovary
3
eye
1
lymph node
Project
67
AMP
Genome assembly (visualization)
128
GRCh38
hg19
Lab
40
Patrick T. Ellinor, Broad
27
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
6
right atrium auricular region
3
coronary artery
2
heart
2
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
5
Hepatic endoderm
2
cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
2
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