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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
27
ChIP-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
1
GRO-seq
Assay category
96
Transcription
38
DNA accessibility
27
DNA binding
8
DNA methylation
Target of assay
26
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
4
December, 2017
3
February, 2018
3
February, 2020
3
March, 2020
2
February, 2021
1
January, 2018
Available data
98
tsv
38
bed narrowPeak
36
bam
10
bigWig
8
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
173
Homo sapiens
Biosample type
160
tissue
8
in vitro differentiated cells
3
primary cell
2
cell line
Organ
165
heart
130
liver
122
brain
94
connective tissue
92
pancreas
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
58
epithelium
48
artery
35
kidney
27
eye
26
limb
23
musculature of body
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
173
AMP
Genome assembly (visualization)
255
GRCh38
hg19
1
hg18
Lab
173
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
173 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
GRO-seq
tissue
coronary artery
35
2
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
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in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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