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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
67
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
1
GRO-seq
Assay category
96
Transcription
67
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
36
histone
36
histone modification
26
control
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
4
December, 2017
3
February, 2018
3
February, 2020
3
March, 2020
2
February, 2021
1
January, 2018
Available data
98
tsv
78
bed narrowPeak
50
bigWig
36
bam
8
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
213
Homo sapiens
Biosample type
200
tissue
8
in vitro differentiated cells
3
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
295
GRCh38
hg19
1
hg18
Lab
173
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
213 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
GRO-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
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in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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