Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
68
ChIP-seq
35
ATAC-seq
8
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
1
GRO-seq
Assay category
96
Transcription
68
DNA binding
38
DNA accessibility
8
DNA methylation
Target of assay
37
histone
37
histone modification
26
control
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
5
June, 2019
4
December, 2017
3
February, 2018
3
February, 2020
3
March, 2020
2
February, 2021
1
January, 2018
1
October, 2019
Available data
98
tsv
78
bed narrowPeak
50
bigWig
36
bam
8
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
214
Homo sapiens
Biosample type
201
tissue
8
in vitro differentiated cells
3
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
214
AMP
Genome assembly (visualization)
295
GRCh38
hg19
1
hg18
Lab
174
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
214 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
total RNA-seq
GRO-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
4
1
heart right ventricle
17
2
2
1
right cardiac atrium
18
1
1
1
+ See 11 more…
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download