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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
26
ChIP-seq
22
total RNA-seq
6
single cell RNA-seq
5
pCHi-C
2
WGBS
1
DNase-seq
Assay category
37
DNA accessibility
28
Transcription
26
DNA binding
2
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
Date released
39
February, 2023
31
October, 2019
11
May, 2019
6
August, 2021
4
February, 2020
2
February, 2021
2
July, 2019
2
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
27
bam
15
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
98
Homo sapiens
Biosample type
89
tissue
7
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
hg19
197
GRCh38
Lab
98
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
98 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
WGBS
DNase-seq
tissue
coronary artery
35
2
1
islet of Langerhans
1
2
14
4
aorta
2
4
1
2
tibial artery
5
1
ascending aorta
3
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
retinal pigment epithelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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