Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
9
total RNA-seq
7
WGBS
4
Hi-C
4
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
95
DNA binding
9
Transcription
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
Target of assay
51
control
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
Date released
61
August, 2017
18
October, 2018
18
October, 2019
5
February, 2020
5
July, 2019
4
February, 2023
4
June, 2019
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2019
1
May, 2021
Available data
48
bam
28
fastq
21
tagAlign
7
tsv
4
bigWig
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
120
Homo sapiens
Biosample type
91
tissue
24
in vitro differentiated cells
5
primary cell
1
stem cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
1
T1D
Genome assembly (visualization)
hg19
662
GRCh38
Lab
120
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
121 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
tibial nerve
11
1
omental fat pad
8
1
tibial artery
5
1
+ See 4 more…
in vitro differentiated cells
adipocyte
19
1
immature adipocyte
2
preadipocyte
1
white fat cell
1
primary cell
cardiac fibroblast
2
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
See all biosamples
Download