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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
33
total RNA-seq
6
WGBS
5
Hi-C
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
141
DNA binding
34
Transcription
6
DNA methylation
5
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
111
control
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
17
October, 2019
13
December, 2017
6
July, 2019
4
February, 2020
4
November, 2018
1
December, 2018
1
February, 2021
1
March, 2020
1
May, 2019
Available data
114
bam
75
fastq
44
tagAlign
15
tsv
6
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
csv
1
vcf
Organism
192
Homo sapiens
Biosample type
119
tissue
71
cell line
1
in vitro differentiated cells
1
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
192
AMP
Genome assembly (visualization)
hg19
627
GRCh38
Lab
156
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
total RNA-seq
WGBS
Hi-C
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
tibial nerve
11
1
right lobe of liver
3
1
1
1
tibial artery
5
1
gastrocnemius medialis
1
4
+ See 2 more…
cell line
HepG2
56
9
1
1
2
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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