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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
20
May, 2022
12
August, 2021
4
August, 2017
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2020
1
November, 2018
Available data
12
tsv
3
fastq
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
csv
1
vcf
Organism
43
Homo sapiens
Biosample type
28
tissue
15
cell line
Organ
233
pancreas
212
kidney
185
epithelium
145
heart
89
bone element
48
blood vessel
48
vasculature
43
liver
39
artery
27
brain
24
eye
20
lung
18
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
hg19
171
GRCh38
Lab
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
11
AMP-T2D consortium
assembly!
hg19
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
43 results
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total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
1
2
1
1
1
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