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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
5
WGBS
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
total RNA-seq
Assay category
119
DNA binding
5
DNA methylation
2
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
90
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
13
December, 2017
4
November, 2018
1
August, 2021
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
96
bam
75
fastq
44
tagAlign
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
130
Homo sapiens
Biosample type
73
tissue
55
cell line
1
in vitro differentiated cells
1
primary cell
Organ
165
heart
130
liver
122
brain
94
connective tissue
92
pancreas
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
58
epithelium
48
artery
35
kidney
27
eye
26
limb
23
musculature of body
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
hg19
531
GRCh38
Lab
130
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
WGBS
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
total RNA-seq
tissue
liver
62
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
1
1
1
in vitro differentiated cells
hepatocyte
1
primary cell
hepatocyte
1
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