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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
32
total RNA-seq
11
WGBS
4
pCHi-C
2
STARR-seq
1
DNase-seq
1
Hi-C
1
RNA microarray
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
177
DNA binding
33
Transcription
11
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
118
control
50
histone
50
histone modification
32
broad histone mark
18
narrow histone mark
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
76
August, 2017
49
November, 2017
24
May, 2020
20
May, 2022
18
August, 2021
18
October, 2018
13
December, 2017
4
November, 2018
3
February, 2020
2
March, 2020
1
August, 2018
1
December, 2018
1
February, 2021
1
July, 2019
Available data
117
bam
98
fastq
51
tagAlign
15
tsv
7
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
vcf
Organism
230
Homo sapiens
Biosample type
157
tissue
71
cell line
2
in vitro differentiated cells
1
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
231
AMP
Genome assembly (visualization)
hg19
955
GRCh38
Lab
195
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
231 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
STARR-seq
DNase-seq
Hi-C
RNA microarray
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
right lobe of liver
3
1
1
1
+ See 1 more…
cell line
HepG2
56
9
1
1
2
1
1
in vitro differentiated cells
hepatocyte
1
white fat cell
1
primary cell
hepatocyte
1
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