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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
65
ATAC-seq
53
ChIP-seq
51
WGBS
11
snATAC-seq
4
MeRIP-seq
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
78
DNA accessibility
73
Transcription
53
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
46
control
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
86
May, 2022
56
February, 2023
29
August, 2017
19
September, 2020
11
October, 2018
10
October, 2019
8
January, 2021
7
August, 2020
6
February, 2021
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2020
2
August, 2021
2
June, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
52
bam
16
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
260
Homo sapiens
Biosample type
161
primary cell
92
tissue
8
cell line
1
in vitro differentiated cells
Organ
262
pancreas
218
kidney
183
epithelium
166
liver
164
heart
121
brain
90
connective tissue
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
6
embryo
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
149
HPAP
85
AMP
28
T1D
Genome assembly (visualization)
hg19
583
GRCh38
Lab
149
Klaus Kaestner, Upenn
72
AMP-T2D consortium
33
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
inconsistent ontology term
1
audit script error
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
262 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
29
6
31
pancreatic beta cell
11
16
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
18
16
19
7
4
1
body of pancreas
1
9
2
2
pancreas
1
3
2
4
1
endocrine pancreas
2
cell line
Panc1
7
EndoC_BH1
1
in vitro differentiated cells
pancreatic PP cell
1
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