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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
total RNA-seq
10
DNase-seq
3
ATAC-seq
2
pCHi-C
Assay category
25
DNA binding
13
DNA accessibility
12
Transcription
Target of assay
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
12
February, 2020
12
November, 2017
10
June, 2019
8
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
1
July, 2019
Available data
36
bam
19
tagAlign
14
tsv
12
bigWig
10
bed bed3+
10
bed broadPeak
10
bed narrowPeak
10
bigBed broadPeak
10
bigBed narrowPeak
3
fastq
Organism
52
Homo sapiens
Biosample type
52
tissue
Organ
279
pancreas
225
kidney
210
epithelium
165
heart
146
liver
89
bone element
68
blood vessel
68
vasculature
52
brain
52
connective tissue
48
artery
35
adipose tissue
25
eye
25
limb
20
lung
17
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
49
GRCh38
hg19
Lab
52
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
hg19
target.investigated_as!
histone
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
caudate nucleus
2
1
1
cerebellum (Hemisphere)
2
1
1
Ammon's horn
1
1
1
brain
3
layer of hippocampus
3
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