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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
51
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
94
DNA accessibility
73
Transcription
51
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
narrow histone mark
Date released
86
May, 2022
56
February, 2023
25
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
54
bam
16
bigWig
9
tsv
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
tagAlign
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
282
Homo sapiens
Biosample type
161
primary cell
88
tissue
34
cell line
1
in vitro differentiated cells
Organ
284
pancreas
225
kidney
212
epithelium
165
heart
158
liver
97
brain
89
bone element
80
connective tissue
70
blood vessel
70
vasculature
55
adipose tissue
48
artery
25
eye
25
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
7
embryo
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
107
AMP
28
T1D
Genome assembly (visualization)
hg19
568
GRCh38
Lab
149
Klaus Kaestner, Upenn
88
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assembly!
hg19
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
284 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
31
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
15
7
4
1
body of pancreas
1
9
2
2
pancreas
1
3
2
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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