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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
562
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
7
3D chromatin structure
Date released
84
February, 2021
4
July, 2019
2
August, 2021
2
December, 2019
1
December, 2018
1
March, 2023
Available data
84
txt
2
tsv
1
bedpe bed3+
1
fastq
1
hic
Organism
93
Homo sapiens
Biosample type
92
tissue
1
cell line
1
primary cell
Organ
84
bone element
4
limb
4
musculature of body
2
kidney
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
1
pancreas
Project
93
AMP
1
ITG
Genome assembly (visualization)
hg19
2
GRCh38
Lab
92
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
84
inconsistent ontology term
2
audit script error
assembly!
hg19
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
94 results
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RNA microarray
Hi-C
tissue
bone element
84
gastrocnemius medialis
4
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
+ See 1 more…
cell line
HepG2
1
primary cell
chondrocytes
1
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