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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
163
single cell RNA-seq
87
RNA microarray
86
total RNA-seq
63
ATAC-seq
27
WGBS
25
pCHi-C
21
snATAC-seq
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
249
Transcription
101
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
104
August, 2017
101
August, 2021
93
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
259
bam
158
tsv
143
bed narrowPeak
133
tagAlign
125
bigWig
99
txt
83
fastq
68
bigBed narrowPeak
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
878
Homo sapiens
Biosample type
881
tissue
460
primary cell
128
cell line
97
in vitro differentiated cells
7
stem cell
Organ
200
heart
122
brain
93
liver
92
pancreas
88
bone element
66
kidney
65
connective tissue
64
adipose tissue
63
blood vessel
63
vasculature
46
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
786
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1784
GRCh38
hg19
Lab
713
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
assembly!
hg19
target.investigated_as!
recombinant protein
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
881 results
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Clear Filters
ChIP-seq
single cell RNA-seq
RNA microarray
total RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
40
32
26
4
7
1
4
liver
62
1
20
3
1
bone element
84
kidney
7
53
left cardiac atrium
40
18
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