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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
MeRIP-seq
Assay category
29
DNA binding
Target of assay
140
histone
140
histone modification
70
broad histone mark
70
narrow histone mark
34
control
13
transcription factor
5
RNA binding protein
5
nucleotide modification
Date released
19
August, 2017
5
May, 2021
5
November, 2020
4
August, 2021
1
October, 2017
Available data
bam
142
fastq
66
tagAlign
Organism
34
Homo sapiens
Biosample type
20
tissue
7
cell line
7
in vitro differentiated cells
Organ
11
pancreas
7
connective tissue
7
liver
5
adipose tissue
3
epithelium
3
musculature of body
1
brain
Project
34
AMP
Genome assembly (visualization)
hg19
Lab
20
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assembly!
hg19
files.file_type!
bam
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
6
2
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
brain
1
cell line
HepG2
4
EndoC_BH1
3
in vitro differentiated cells
embryonic stem cell
5
adipocyte
2
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