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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
34
ATAC-seq
17
DNase-seq
Assay category
146
Transcription
DNA binding
51
DNA accessibility
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
14
June, 2019
7
August, 2020
7
October, 2019
6
May, 2021
5
December, 2019
5
July, 2019
5
September, 2017
3
August, 2017
3
August, 2018
3
September, 2020
2
March, 2020
2
November, 2019
2
October, 2018
1
June, 2018
Available data
195
bigWig
187
bam
146
tsv
126
fastq
41
bed narrowPeak
39
bigBed narrowPeak
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
Organism
197
Homo sapiens
Biosample type
159
primary cell
36
cell line
2
in vitro differentiated cells
Organ
491
connective tissue
478
pancreas
406
adipose tissue
197
epithelium
171
liver
166
kidney
153
heart
116
vasculature
114
blood vessel
103
artery
66
bone element
49
limb
46
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
2
vein
1
pericardium
Project
185
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
210
hg19
197
GRCh38
Lab
187
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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