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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
48
ATAC-seq
17
DNase-seq
8
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
146
Transcription
DNA binding
66
DNA accessibility
8
3D chromatin structure
6
DNA methylation
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
14
June, 2019
13
July, 2019
12
February, 2023
9
October, 2019
7
August, 2020
6
May, 2021
5
December, 2019
5
March, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
November, 2019
3
October, 2022
3
September, 2020
2
October, 2018
1
June, 2018
Available data
200
bigWig
188
bam
147
tsv
126
fastq
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
226
Homo sapiens
Biosample type
173
primary cell
39
cell line
12
tissue
2
in vitro differentiated cells
Organ
516
connective tissue
511
pancreas
409
adipose tissue
226
epithelium
197
liver
172
kidney
158
heart
123
vasculature
120
blood vessel
103
artery
70
bone element
53
brain
49
limb
47
musculature of body
32
eye
18
ureter
14
embryo
12
skeleton
7
nerve
5
vein
4
spleen
2
pericardium
1
blood
1
bodily fluid
Project
211
AMP
13
HPAP
2
T1D
Genome assembly (visualization)
210
hg19
197
GRCh38
Lab
213
AMP-T2D consortium
13
Klaus Kaestner, Upenn
Audit category:
42
inconsistent ontology term
4
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
10
12
13
1
pancreatic beta cell
10
12
10
1
pancreatic acinar cell
4
12
5
1
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 19 more…
cell line
EndoC_BH1
33
3
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
12
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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