Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
70
single cell RNA-seq
53
DNase-seq
42
ATAC-seq
1
WGBS
Assay category
150
Transcription
DNA binding
95
DNA accessibility
1
DNA methylation
Date released
46
June, 2019
40
September, 2018
33
April, 2018
33
July, 2018
32
February, 2021
17
October, 2019
7
August, 2020
6
July, 2019
6
May, 2021
5
December, 2019
5
September, 2017
3
August, 2017
3
August, 2018
3
September, 2020
2
March, 2020
2
November, 2019
2
October, 2018
1
June, 2018
Available data
238
bigWig
236
bam
150
tsv
126
fastq
85
bed narrowPeak
75
bigBed narrowPeak
52
bed bed3+
52
bed broadPeak
52
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
246
Homo sapiens
Biosample type
159
primary cell
49
tissue
36
cell line
2
in vitro differentiated cells
Organ
491
connective tissue
478
pancreas
406
adipose tissue
197
epithelium
171
liver
166
kidney
153
heart
116
vasculature
114
blood vessel
103
artery
66
bone element
49
limb
46
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
2
vein
1
pericardium
Project
234
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
258
hg19
246
GRCh38
Lab
236
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
39
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
246 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 18 more…
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
4
2
1
tibial artery
2
1
distal epiphysis of femur
1
+ See 7 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
Download