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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Date released
143
May, 2020
7
July, 2019
5
December, 2019
5
January, 2019
4
November, 2018
2
June, 2019
2
October, 2019
1
August, 2017
1
February, 2021
1
March, 2020
Available data
171
bam
169
bigWig
162
tsv
10
fastq
8
bed narrowPeak
6
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
171
Homo sapiens
Biosample type
156
tissue
8
primary cell
7
cell line
Organ
491
connective tissue
478
pancreas
406
adipose tissue
197
epithelium
171
liver
166
kidney
153
heart
116
vasculature
114
blood vessel
103
artery
66
bone element
49
limb
46
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
2
vein
1
pericardium
Project
171
AMP
Genome assembly (visualization)
196
hg19
171
GRCh38
Lab
171
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
171 results
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total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
liver
147
2
1
right lobe of liver
2
1
1
2
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
cell line
HepG2
5
1
1
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