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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
100
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
345
DNA binding
100
Transcription
12
DNA accessibility
1
3D chromatin structure
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
31
histone
31
histone modification
28
chromatin remodeller
16
broad histone mark
15
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
92
February, 2021
56
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
March, 2020
5
May, 2021
Available data
457
bam
448
bigWig
357
bed narrowPeak
323
bigBed narrowPeak
320
fastq
100
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
hdf5
Organism
458
Homo sapiens
Biosample type
1834
tissue
536
primary cell
458
cell line
263
in vitro differentiated cells
3
stem cell
Organ
267
liver
64
artery
64
blood vessel
64
heart
64
vasculature
54
blood
54
bodily fluid
52
pancreas
46
epithelium
12
kidney
8
embryo
Project
457
AMP
1
T1D
Genome assembly (visualization)
523
hg19
458
GRCh38
Lab
458
AMP-T2D consortium
Audit category:
54
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA methylation
month_released!
March, 2020
BIOSAMPLE
ASSAY
458 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
261
5
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
12
31
1
H1-hESC
8
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