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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
35
transcription factor
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
55
November, 2017
19
August, 2017
9
November, 2018
7
October, 2019
4
October, 2017
1
November, 2020
Available data
280
bam
280
bed narrowPeak
280
bigBed narrowPeak
279
bigWig
223
fastq
55
bed broadPeak
54
tagAlign
50
bigBed broadPeak
Organism
55
Homo sapiens
Biosample type
44
cell line
6
primary cell
5
tissue
Organ
44
liver
11
brain
4
epithelium
4
vasculature
2
blood vessel
Project
55
AMP
Genome assembly (visualization)
70
hg19
55
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
11
inconsistent control read length
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
cell line
HepG2
44
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
tissue
middle frontal area 46
2
caudate nucleus
1
cingulate gyrus
1
substantia nigra
1
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