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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
171
DNA binding
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
77
October, 2019
63
November, 2017
25
May, 2019
6
October, 2017
Available data
169
bam
169
bed narrowPeak
168
bigWig
94
bigBed narrowPeak
82
tagAlign
14
bed broadPeak
12
fastq
6
bigBed broadPeak
1
tagAlign bed3+
Organism
171
Homo sapiens
Biosample type
165
tissue
6
primary cell
Organ
360
liver
171
brain
157
pancreas
97
epithelium
75
connective tissue
75
vasculature
73
blood vessel
73
heart
54
blood
54
bodily fluid
47
limb
39
kidney
25
artery
24
nerve
18
adipose tissue
15
embryo
13
musculature of body
12
spleen
10
vein
2
eye
1
pituitary gland
Project
171
AMP
Genome assembly (visualization)
171
GRCh38
123
hg19
Lab
171
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
171 results
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ChIP-seq
tissue
layer of hippocampus
17
angular gyrus
14
temporal lobe
13
caudate nucleus
12
substantia nigra
12
+ See 63 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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