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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
19
histone
19
histone modification
17
transcription factor
11
broad histone mark
10
chromatin remodeller
8
narrow histone mark
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
36
bam
36
bed narrowPeak
36
bigWig
36
fastq
23
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
tagAlign
6
bed bed3+
Organism
36
Homo sapiens
Biosample type
22
cell line
11
in vitro differentiated cells
2
stem cell
1
tissue
Organ
22
liver
3
embryo
1
epithelium
1
pancreas
Project
36
AMP
Genome assembly (visualization)
40
hg19
36
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
36
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2017
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
Hepatic endoderm
1
stem cell
hESC
2
tissue
body of pancreas
1
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