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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
44
ChIP-seq
10
ATAC-seq
1
Hi-C
Assay category
98
Transcription
44
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
95
May, 2021
45
May, 2020
7
August, 2020
3
September, 2020
2
March, 2020
1
March, 2023
Available data
152
bigWig
142
bam
98
tsv
44
bed narrowPeak
44
tagAlign
10
fastq
1
hic
Organism
153
Homo sapiens
Biosample type
151
primary cell
2
cell line
Organ
12
epithelium
12
pancreas
Project
AMP
142
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
153
GRCh38
145
hg19
Lab
140
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
ITG
Audit category:
6
inconsistent ontology term
award.project!
AMP
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
153 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
44
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
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cell line
EndoC_BH1
2
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