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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ATAC-seq
7
DNase-seq
5
ChIP-seq
1
Hi-C
1
WGBS
Assay category
17
DNA accessibility
5
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
4
transcription factor
3
recombinant protein
1
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
Date released
7
August, 2020
7
June, 2019
3
November, 2018
3
September, 2020
2
November, 2017
1
August, 2021
1
March, 2023
Available data
23
bigWig
15
fastq
13
bam
12
bed narrowPeak
11
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
1
tagAlign
Organism
24
Homo sapiens
Biosample type
tissue
18
primary cell
5
cell line
1
in vitro differentiated cells
Organ
16
epithelium
10
pancreas
6
kidney
5
liver
1
blood vessel
1
connective tissue
1
heart
1
vasculature
Project
13
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
1268
GRCh38
5
hg18
Lab
13
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
ITG
biosample_type!
tissue
assembly!
hg19
BIOSAMPLE
ASSAY
24 results
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ATAC-seq
DNase-seq
ChIP-seq
Hi-C
WGBS
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
+ See 3 more…
cell line
HepG2
4
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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